Query EST sequence	XX (FILE: 78108653-])

         1  cagcatactt tggtatctgg tggtgttaga ggaaccttac catggatggc accagagctt
        61  ctgagtggga aaagtaatat ggtgtcagac aagattgatg tctattcgtt tggaattgtc
       121  atgtgggagt tgcttactgg ggaagagcca tactctggca tgcgtgctgc tgaaattatt
       181  gggggcattg taaacgattc cctacgtcct caaattcctt catggtgtga tcctgagtgg
       241  aagggattga tggaaagctg ttggtccagt gatccagctg agagaccgtc cttcacggat
       301  atatctcaaa ggttgaggaa aatggccgcc gcaatgaatg tgaagtaaag catcgcagtt
       361  gatgacccta ctccaagtga taatttaaca agtgctgact tcatgggaga aaatttatgt
       421  catggagatt ccaaagcatg tttgatgttt tcttttaatc ctggagtaaa ccggctacca
       481  tttgccttcc gccgaaaaca agtatgctat atggcgcatt gtcttgatgg gagctgttgc
       541  actgtcatgt aaataagttt tgacttgctg gcccgtagta gatgtgcaaa gtaataggca
       601  cgatcacaca gttacttttt tttttcccat ataaattgtg ttttaggata ggtagaacga
       661  acatgactgg agcgatcctt gttcagattg taaagaaaag gacagaccca gtgctgacgg
       721  ttcttatatg agtggggtct ggttaaagaa taacc                           

Predicted gene structure (within BAC gi| 51315585 | segment 5875 to 8859):

 Exon  1        5875        5883 (   9 n);        EST          84          91 (   8 n); score:  0.778
  Intron  1        5884        7295 ( 1412 n); Pd:  0.900 (s:  0.00), Pa:  0.000 (s:  0.98)
 Exon  2        7296        7385 (  90 n);        EST          92         181 (  90 n); score:  0.978
  Intron  2        7386        8088 ( 703 n); Pd:  0.966 (s:  0.96), Pa:  0.862 (s:  1.00)
 Exon  3        8089        8257 ( 169 n);        EST         182         350 ( 169 n); score:  0.994
  Intron  3        8258        8379 ( 122 n); Pd:  0.999 (s:  1.00), Pa:  0.445 (s:  0.98)
 Exon  4        8380        8475 (  96 n);        EST         351         446 (  96 n); score:  0.969
  Intron  4        8476        8553 (  78 n); Pd:  0.804 (s:  0.96), Pa:  0.985 (s:  0.96)
 Exon  5        8554        8859 ( 306 n);        EST         447         755 ( 309 n); score:  0.946

MATCH   chr+ 78108653-        0.966   670  0.887  C
PGS_chr+_78108653-     (5875  5883,7296  7385,8089  8257,8380  8475,8554  8859)

Alignment:

GTTAGTACAG TATCCTGGAG AGTTTGTGGT GACATTCCCA AGGGCATACC ACATTGGGTT            5934
|| || |||                                                        
GTCAG-ACA. .......... .......... .......... .......... ..........              91

TAGTCATGGT TAGTTATGCC ATTGAACTAA TGATGCCTTT TTGGCACAGC TTTATTGAAT            5994
                                                                 
.......... .......... .......... .......... .......... ..........              91

TGATTGTGAT GTGCTATTTG TTAACTATGT TTATTCCAGC TTTGCTAGAT TTTCACCTTC            6054
                                                                 
.......... .......... .......... .......... .......... ..........              91

ATGGTATGAG CAGTATAAAC AAAATAATAA TGGTTTCATG GACAATCCTT AAATGGATCA            6114
                                                                 
.......... .......... .......... .......... .......... ..........              91

GTGCTCCCCT CATCAGTTAT ATAACAAACT GAGGGTGCTC GAGATATCTC TACTACTCTA            6174
                                                                 
.......... .......... .......... .......... .......... ..........              91

TATGTTCTTA GTGTAGGCGT CCACACAGGG TCTGTTCTGC CCGCCGCGAG CACGCCGCGA            6234
                                                                 
.......... .......... .......... .......... .......... ..........              91

TTTCTCCACG CGCAGCCCTC GCAATCCGCC GCCTTTCCAT CCGCGGCCAA TCCGCCGCGC            6294
                                                                 
.......... .......... .......... .......... .......... ..........              91

CAAATCCGCC GCCACACTCC CTGCGCCCGC AACGCCCGCC CGCCGCGATT TCTCCACCCG            6354
                                                                 
.......... .......... .......... .......... .......... ..........              91

CAGCCCCCCG CAATCCGCCG CCTTTCCATC CGCGGCCGCA ATCGTTTCCA TCCGCGGCTG            6414
                                                                 
.......... .......... .......... .......... .......... ..........              91

CAATCCACCG CGCCAAATCC GCCGCCACAC CCCTGCGCCC GCAACGCCCA CCACTGCGCC            6474
                                                                 
.......... .......... .......... .......... .......... ..........              91

GCCCTTCCAT CCACGCGCAG CATGCCGCGA TCCACAACTG TTGTGCCATC CTCGCCTCGC            6534
                                                                 
.......... .......... .......... .......... .......... ..........              91

ATGCCACGCC ATCCCCCCGA TCGTCGGTGT CGCCCAAAAA CCGCGCGGCC CTTCCATCCA            6594
                                                                 
.......... .......... .......... .......... .......... ..........              91

CGCGCATCCG TCGTCGGCAA AGTCTGGGCC ACCGTGGTCA AGCTTGCTGA TGTCGCCATC            6654
                                                                 
.......... .......... .......... .......... .......... ..........              91

CTGTAGCACT TCACCGCGGG GTGGTCTTTG TGACGAATCG TCGTCAAGCT AGATCTGCAG            6714
                                                                 
.......... .......... .......... .......... .......... ..........              91

CGGTCAGGGG CGGATTTGGG ACTAACGAGC CACTGCTCCC GATGGCGGCA TTCGCAGCCC            6774
                                                                 
.......... .......... .......... .......... .......... ..........              91

CTTCCTTGTC CTCGCGCATC CTCCTCGCCT CGCCCCACTC CCCGCCCACT CTCCTCCGCC            6834
                                                                 
.......... .......... .......... .......... .......... ..........              91

TGCGCCGCGC GGGCGGCCGC TCTCTGGAGC TGTCGTCACG GCGCGGCGGG AGCGCGCGCC            6894
                                                                 
.......... .......... .......... .......... .......... ..........              91

TTCGGGTCGT TCGACGAGCG GTGACGGAGG AGGATAGCGG GACCGCGCGC GGAGACGAGG            6954
                                                                 
.......... .......... .......... .......... .......... ..........              91

AGGTGGAGGA GGCCCCGGAG GAACCAGTGG CTGGCCGCGA CCTCATCACG CTCGCCGCCT            7014
                                                                 
.......... .......... .......... .......... .......... ..........              91

GCCTCGTGGG CCTCCTCACC GGCGTCTCCA TCGTGCTCTT CAACCTCTCG GTAGGTAGCC            7074
                                                                 
.......... .......... .......... .......... .......... ..........              91

ACCTAGCGAG CTCGGTTTCA TGTTTTCATC CCCGGTGCCA AACGGAGGCC GTAGTACGTT            7134
                                                                 
.......... .......... .......... .......... .......... ..........              91

TGAACTTCAG AGGCGAATTG GTTGAAGGCA ACTGAACAGC GGGTTTGGTC TTAATTTTGA            7194
                                                                 
.......... .......... .......... .......... .......... ..........              91

CATTCAGCAC TGCTTTGTCT TGTAAGTACA TTTAATAAAC CATATTAAAC AATGATCCAC            7254
                                                                 
.......... .......... .......... .......... .......... ..........              91

TTTTTTGTAT TCTGACAAAA AACTATTTCT ATGTATCTTG TAGATTGATG TCTATTCGTT            7314
                                             ||||||||| ||||||||||
.......... .......... .......... .......... .AGATTGATG TCTATTCGTT             110

TGGAATTGTC ATGTGGGAGT TGCTTACTAG GGAAGAGCCA TACTCTGGTA TGCGTGCTGC            7374
|||||||||| |||||||||| |||||||| | |||||||||| |||||||| | ||||||||||
TGGAATTGTC ATGTGGGAGT TGCTTACTGG GGAAGAGCCA TACTCTGGCA TGCGTGCTGC             170

TGAAATTATT GGTAATGTCC AAAGTTCCCT ATATGTACAA TTCTATGCCT TGATCTGTTA            7434
|||||||||| |                                                     
TGAAATTATT G......... .......... .......... .......... ..........             181

TGACACTTTC CACCATGTTC TGACCTTACC TTTTGATATA TCTTAGTTAG AATAAGTTGT            7494
                                                                 
.......... .......... .......... .......... .......... ..........             181

GGACTTAAGA ACTGTGAACA GAGAAAGTTT ATCTTCTAGA ATTTACTTGT TTGGATTTGG            7554
                                                                 
.......... .......... .......... .......... .......... ..........             181

ATGCAGCTTT GAAAGAACAA ATAAGGCTGA GCTAATAGAA AAGAAGGTTG TATGTTTAGT            7614
                                                                 
.......... .......... .......... .......... .......... ..........             181

GGACATATAA ATGGGTCAGT TGTAAATCCC CAAATATCTT GAGTAATGAA GGTGGGACAT            7674
                                                                 
.......... .......... .......... .......... .......... ..........             181

ATAATTAAAT AGCGGACTTC AATACAAAAC CAGATTATGT AGTTGGCGCC GTAGCTTGAA            7734
                                                                 
.......... .......... .......... .......... .......... ..........             181

TCGGATTATT TGCAGCTGCA ATAATGATGA AGGTTGAAGG ATATAACAAT CTAGGTGTAT            7794
                                                                 
.......... .......... .......... .......... .......... ..........             181

GGTGTAATTA TGTGATTGCA CTTGCAGAAT GTTTTTCTTT TTTGGATTTT CCTTTGATAG            7854
                                                                 
.......... .......... .......... .......... .......... ..........             181

CATGACTTTT TCTCCCTTTG CATAGTAACA TTGGACAAAC CAATGACAAA TTGGTAGATG            7914
                                                                 
.......... .......... .......... .......... .......... ..........             181

TGGATTTGCC CGACATTGTG ATGCACTGCT GCATCATATT CAATAACAGA TGTACTACAG            7974
                                                                 
.......... .......... .......... .......... .......... ..........             181

TATACAGATA GGGGATTTAT GTTGATTTTT GAATCTTTAG TCATAAATAT ATCTCGCCTA            8034
                                                                 
.......... .......... .......... .......... .......... ..........             181

GGCTTGTTGT TATTATGTCA CAGCAGTGAT CTGATTACAA TGCCTTTTTT CTAGGGGGCA            8094
                                                           ||||||
.......... .......... .......... .......... .......... ....GGGGCA             187

TTGTAAACGA TTCCCTACGT CCTCAAATTC CTTCATGGTG TGATCCTGAG TGGAAGGGGT            8154
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| |
TTGTAAACGA TTCCCTACGT CCTCAAATTC CTTCATGGTG TGATCCTGAG TGGAAGGGAT             247

TGATGGAAAG CTGTTGGTCC AGTGATCCAG CTGAGAGACC GTCCTTCACG GATATATCTC            8214
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGATGGAAAG CTGTTGGTCC AGTGATCCAG CTGAGAGACC GTCCTTCACG GATATATCTC             307

AAAGGTTGAG GAAAATGGCC GCCGCAATGA ATGTGAAGTA AAGGTCCGGA AGCCATATTT            8274
|||||||||| |||||||||| |||||||||| |||||||||| |||                  
AAAGGTTGAG GAAAATGGCC GCCGCAATGA ATGTGAAGTA AAG....... ..........             350

GTCTTGTATG TGTTCCCCAC ATCCAATATA TATAGCGATA TACAAGACGA AGGCAGAGTT            8334
                                                                 
.......... .......... .......... .......... .......... ..........             350

CAAACAGGAT TATTTTGAGT AAATATGTTC CATATGTCTT GGCAGCATCG CAGTTGATGA            8394
                                                 ||||| ||||||||||
.......... .......... .......... .......... .....CATCG CAGTTGATGA             365

CCCTACTCCA AGTGATAATT TATCAAGTGC TGACTTCATG GGAGAACATC TATGTCATGG            8454
|||||||||| |||||||||| || ||||||| |||||||||| |||||| ||  ||||||||||
CCCTACTCCA AGTGATAATT TAACAAGTGC TGACTTCATG GGAGAAAATT TATGTCATGG             425

AGATTCCAAA GCATGTTTGA TGTGAGTCTG CCGTTCGGTT TGTTGTTTAC TCCTTGTATG            8514
|||||||||| |||||||||| |                                          
AGATTCCAAA GCATGTTTGA T......... .......... .......... ..........             446

ACCATTAGCA AAAACTGAAG TTTCTGTTTC CTGTTGCAGG TTTTCTTTTA ATCCTAGAGT            8574
                                          | |||||||||| ||||| ||||
.......... .......... .......... .........G TTTTCTTTTA ATCCTGGAGT             467

AAACCGGCTA CCATTTGCCT TCCGTCGAAA ACAAGTATGC TATTTGGCGC ATTGTCTTGA            8634
|||||||||| |||||||||| |||| ||||| |||||||||| ||| |||||| ||||||||||
AAACCGGCTA CCATTTGCCT TCCGCCGAAA ACAAGTATGC TATATGGCGC ATTGTCTTGA             527

TGGGAGCTGT TGCACTGTCA TGTAAATAAG TTTTGACTTG TTGGCCCGTA GTAGATGTGC            8694
|||||||||| |||||||||| |||||||||| ||||||||||  ||||||||| ||||||||||
TGGGAGCTGT TGCACTGTCA TGTAAATAAG TTTTGACTTG CTGGCCCGTA GTAGATGTGC             587

AAAGTAATAG GCACGATCAC ACAGTTAC-- -TTTTTTCCC CATATAAATT GTGTTCTAGG            8751
|||||||||| |||||||||| ||||||||    |||||| || |||||||||| ||||| ||||
AAAGTAATAG GCACGATCAC ACAGTTACTT TTTTTTTTCC CATATAAATT GTGTTTTAGG             647

ATAGGTAGAA CGAACATGAC TGGAGCGATC CTTGTTCAGA TTGTAAAGAA AAGGACAGAG            8811
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| 
ATAGGTAGAA CGAACATGAC TGGAGCGATC CTTGTTCAGA TTGTAAAGAA AAGGACAGAC             707

CCAGTGCTGA CGGTTCTTAT ATGAGTGGGG TCTCGTCAAA GAATAACC                         8859
|||||||||| |||||||||| |||||||||| ||| || ||| ||||||||             
CCAGTGCTGA CGGTTCTTAT ATGAGTGGGG TCTGGTTAAA GAATAACC                          755


hqPGS_chr+_78108653-     (7296  7385,8089  8257,8380  8475,8554  8859)