Query EST sequence XX (FILE: 78108653-]) 1 cagcatactt tggtatctgg tggtgttaga ggaaccttac catggatggc accagagctt 61 ctgagtggga aaagtaatat ggtgtcagac aagattgatg tctattcgtt tggaattgtc 121 atgtgggagt tgcttactgg ggaagagcca tactctggca tgcgtgctgc tgaaattatt 181 gggggcattg taaacgattc cctacgtcct caaattcctt catggtgtga tcctgagtgg 241 aagggattga tggaaagctg ttggtccagt gatccagctg agagaccgtc cttcacggat 301 atatctcaaa ggttgaggaa aatggccgcc gcaatgaatg tgaagtaaag catcgcagtt 361 gatgacccta ctccaagtga taatttaaca agtgctgact tcatgggaga aaatttatgt 421 catggagatt ccaaagcatg tttgatgttt tcttttaatc ctggagtaaa ccggctacca 481 tttgccttcc gccgaaaaca agtatgctat atggcgcatt gtcttgatgg gagctgttgc 541 actgtcatgt aaataagttt tgacttgctg gcccgtagta gatgtgcaaa gtaataggca 601 cgatcacaca gttacttttt tttttcccat ataaattgtg ttttaggata ggtagaacga 661 acatgactgg agcgatcctt gttcagattg taaagaaaag gacagaccca gtgctgacgg 721 ttcttatatg agtggggtct ggttaaagaa taacc Predicted gene structure (within BAC gi| 51315585 | segment 5875 to 8859): Exon 1 5875 5883 ( 9 n); EST 84 91 ( 8 n); score: 0.778 Intron 1 5884 7295 ( 1412 n); Pd: 0.900 (s: 0.00), Pa: 0.000 (s: 0.98) Exon 2 7296 7385 ( 90 n); EST 92 181 ( 90 n); score: 0.978 Intron 2 7386 8088 ( 703 n); Pd: 0.966 (s: 0.96), Pa: 0.862 (s: 1.00) Exon 3 8089 8257 ( 169 n); EST 182 350 ( 169 n); score: 0.994 Intron 3 8258 8379 ( 122 n); Pd: 0.999 (s: 1.00), Pa: 0.445 (s: 0.98) Exon 4 8380 8475 ( 96 n); EST 351 446 ( 96 n); score: 0.969 Intron 4 8476 8553 ( 78 n); Pd: 0.804 (s: 0.96), Pa: 0.985 (s: 0.96) Exon 5 8554 8859 ( 306 n); EST 447 755 ( 309 n); score: 0.946 MATCH chr+ 78108653- 0.966 670 0.887 C PGS_chr+_78108653- (5875 5883,7296 7385,8089 8257,8380 8475,8554 8859) Alignment: GTTAGTACAG TATCCTGGAG AGTTTGTGGT GACATTCCCA AGGGCATACC ACATTGGGTT 5934 || || ||| GTCAG-ACA. .......... .......... .......... .......... .......... 91 TAGTCATGGT TAGTTATGCC ATTGAACTAA TGATGCCTTT TTGGCACAGC TTTATTGAAT 5994 .......... .......... .......... .......... .......... .......... 91 TGATTGTGAT GTGCTATTTG TTAACTATGT TTATTCCAGC TTTGCTAGAT TTTCACCTTC 6054 .......... .......... .......... .......... .......... .......... 91 ATGGTATGAG CAGTATAAAC AAAATAATAA TGGTTTCATG GACAATCCTT AAATGGATCA 6114 .......... .......... .......... .......... .......... .......... 91 GTGCTCCCCT CATCAGTTAT ATAACAAACT GAGGGTGCTC GAGATATCTC TACTACTCTA 6174 .......... .......... .......... .......... .......... .......... 91 TATGTTCTTA GTGTAGGCGT CCACACAGGG TCTGTTCTGC CCGCCGCGAG CACGCCGCGA 6234 .......... .......... .......... .......... .......... .......... 91 TTTCTCCACG CGCAGCCCTC GCAATCCGCC GCCTTTCCAT CCGCGGCCAA TCCGCCGCGC 6294 .......... .......... .......... .......... .......... .......... 91 CAAATCCGCC GCCACACTCC CTGCGCCCGC AACGCCCGCC CGCCGCGATT TCTCCACCCG 6354 .......... .......... .......... .......... .......... .......... 91 CAGCCCCCCG CAATCCGCCG CCTTTCCATC CGCGGCCGCA ATCGTTTCCA TCCGCGGCTG 6414 .......... .......... .......... .......... .......... .......... 91 CAATCCACCG CGCCAAATCC GCCGCCACAC CCCTGCGCCC GCAACGCCCA CCACTGCGCC 6474 .......... .......... .......... .......... .......... .......... 91 GCCCTTCCAT CCACGCGCAG CATGCCGCGA TCCACAACTG TTGTGCCATC CTCGCCTCGC 6534 .......... .......... .......... .......... .......... .......... 91 ATGCCACGCC ATCCCCCCGA TCGTCGGTGT CGCCCAAAAA CCGCGCGGCC CTTCCATCCA 6594 .......... .......... .......... .......... .......... .......... 91 CGCGCATCCG TCGTCGGCAA AGTCTGGGCC ACCGTGGTCA AGCTTGCTGA TGTCGCCATC 6654 .......... .......... .......... .......... .......... .......... 91 CTGTAGCACT TCACCGCGGG GTGGTCTTTG TGACGAATCG TCGTCAAGCT AGATCTGCAG 6714 .......... .......... .......... .......... .......... .......... 91 CGGTCAGGGG CGGATTTGGG ACTAACGAGC CACTGCTCCC GATGGCGGCA TTCGCAGCCC 6774 .......... .......... .......... .......... .......... .......... 91 CTTCCTTGTC CTCGCGCATC CTCCTCGCCT CGCCCCACTC CCCGCCCACT CTCCTCCGCC 6834 .......... .......... .......... .......... .......... .......... 91 TGCGCCGCGC GGGCGGCCGC TCTCTGGAGC TGTCGTCACG GCGCGGCGGG AGCGCGCGCC 6894 .......... .......... .......... .......... .......... .......... 91 TTCGGGTCGT TCGACGAGCG GTGACGGAGG AGGATAGCGG GACCGCGCGC GGAGACGAGG 6954 .......... .......... .......... .......... .......... .......... 91 AGGTGGAGGA GGCCCCGGAG GAACCAGTGG CTGGCCGCGA CCTCATCACG CTCGCCGCCT 7014 .......... .......... .......... .......... .......... .......... 91 GCCTCGTGGG CCTCCTCACC GGCGTCTCCA TCGTGCTCTT CAACCTCTCG GTAGGTAGCC 7074 .......... .......... .......... .......... .......... .......... 91 ACCTAGCGAG CTCGGTTTCA TGTTTTCATC CCCGGTGCCA AACGGAGGCC GTAGTACGTT 7134 .......... .......... .......... .......... .......... .......... 91 TGAACTTCAG AGGCGAATTG GTTGAAGGCA ACTGAACAGC GGGTTTGGTC TTAATTTTGA 7194 .......... .......... .......... .......... .......... .......... 91 CATTCAGCAC TGCTTTGTCT TGTAAGTACA TTTAATAAAC CATATTAAAC AATGATCCAC 7254 .......... .......... .......... .......... .......... .......... 91 TTTTTTGTAT TCTGACAAAA AACTATTTCT ATGTATCTTG TAGATTGATG TCTATTCGTT 7314 ||||||||| |||||||||| .......... .......... .......... .......... .AGATTGATG TCTATTCGTT 110 TGGAATTGTC ATGTGGGAGT TGCTTACTAG GGAAGAGCCA TACTCTGGTA TGCGTGCTGC 7374 |||||||||| |||||||||| |||||||| | |||||||||| |||||||| | |||||||||| TGGAATTGTC ATGTGGGAGT TGCTTACTGG GGAAGAGCCA TACTCTGGCA TGCGTGCTGC 170 TGAAATTATT GGTAATGTCC AAAGTTCCCT ATATGTACAA TTCTATGCCT TGATCTGTTA 7434 |||||||||| | TGAAATTATT G......... .......... .......... .......... .......... 181 TGACACTTTC CACCATGTTC TGACCTTACC TTTTGATATA TCTTAGTTAG AATAAGTTGT 7494 .......... .......... .......... .......... .......... .......... 181 GGACTTAAGA ACTGTGAACA GAGAAAGTTT ATCTTCTAGA ATTTACTTGT TTGGATTTGG 7554 .......... .......... .......... .......... .......... .......... 181 ATGCAGCTTT GAAAGAACAA ATAAGGCTGA GCTAATAGAA AAGAAGGTTG TATGTTTAGT 7614 .......... .......... .......... .......... .......... .......... 181 GGACATATAA ATGGGTCAGT TGTAAATCCC CAAATATCTT GAGTAATGAA GGTGGGACAT 7674 .......... .......... .......... .......... .......... .......... 181 ATAATTAAAT AGCGGACTTC AATACAAAAC CAGATTATGT AGTTGGCGCC GTAGCTTGAA 7734 .......... .......... .......... .......... .......... .......... 181 TCGGATTATT TGCAGCTGCA ATAATGATGA AGGTTGAAGG ATATAACAAT CTAGGTGTAT 7794 .......... .......... .......... .......... .......... .......... 181 GGTGTAATTA TGTGATTGCA CTTGCAGAAT GTTTTTCTTT TTTGGATTTT CCTTTGATAG 7854 .......... .......... .......... .......... .......... .......... 181 CATGACTTTT TCTCCCTTTG CATAGTAACA TTGGACAAAC CAATGACAAA TTGGTAGATG 7914 .......... .......... .......... .......... .......... .......... 181 TGGATTTGCC CGACATTGTG ATGCACTGCT GCATCATATT CAATAACAGA TGTACTACAG 7974 .......... .......... .......... .......... .......... .......... 181 TATACAGATA GGGGATTTAT GTTGATTTTT GAATCTTTAG TCATAAATAT ATCTCGCCTA 8034 .......... .......... .......... .......... .......... .......... 181 GGCTTGTTGT TATTATGTCA CAGCAGTGAT CTGATTACAA TGCCTTTTTT CTAGGGGGCA 8094 |||||| .......... .......... .......... .......... .......... ....GGGGCA 187 TTGTAAACGA TTCCCTACGT CCTCAAATTC CTTCATGGTG TGATCCTGAG TGGAAGGGGT 8154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | TTGTAAACGA TTCCCTACGT CCTCAAATTC CTTCATGGTG TGATCCTGAG TGGAAGGGAT 247 TGATGGAAAG CTGTTGGTCC AGTGATCCAG CTGAGAGACC GTCCTTCACG GATATATCTC 8214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGGAAAG CTGTTGGTCC AGTGATCCAG CTGAGAGACC GTCCTTCACG GATATATCTC 307 AAAGGTTGAG GAAAATGGCC GCCGCAATGA ATGTGAAGTA AAGGTCCGGA AGCCATATTT 8274 |||||||||| |||||||||| |||||||||| |||||||||| ||| AAAGGTTGAG GAAAATGGCC GCCGCAATGA ATGTGAAGTA AAG....... .......... 350 GTCTTGTATG TGTTCCCCAC ATCCAATATA TATAGCGATA TACAAGACGA AGGCAGAGTT 8334 .......... .......... .......... .......... .......... .......... 350 CAAACAGGAT TATTTTGAGT AAATATGTTC CATATGTCTT GGCAGCATCG CAGTTGATGA 8394 ||||| |||||||||| .......... .......... .......... .......... .....CATCG CAGTTGATGA 365 CCCTACTCCA AGTGATAATT TATCAAGTGC TGACTTCATG GGAGAACATC TATGTCATGG 8454 |||||||||| |||||||||| || ||||||| |||||||||| |||||| || |||||||||| CCCTACTCCA AGTGATAATT TAACAAGTGC TGACTTCATG GGAGAAAATT TATGTCATGG 425 AGATTCCAAA GCATGTTTGA TGTGAGTCTG CCGTTCGGTT TGTTGTTTAC TCCTTGTATG 8514 |||||||||| |||||||||| | AGATTCCAAA GCATGTTTGA T......... .......... .......... .......... 446 ACCATTAGCA AAAACTGAAG TTTCTGTTTC CTGTTGCAGG TTTTCTTTTA ATCCTAGAGT 8574 | |||||||||| ||||| |||| .......... .......... .......... .........G TTTTCTTTTA ATCCTGGAGT 467 AAACCGGCTA CCATTTGCCT TCCGTCGAAA ACAAGTATGC TATTTGGCGC ATTGTCTTGA 8634 |||||||||| |||||||||| |||| ||||| |||||||||| ||| |||||| |||||||||| AAACCGGCTA CCATTTGCCT TCCGCCGAAA ACAAGTATGC TATATGGCGC ATTGTCTTGA 527 TGGGAGCTGT TGCACTGTCA TGTAAATAAG TTTTGACTTG TTGGCCCGTA GTAGATGTGC 8694 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TGGGAGCTGT TGCACTGTCA TGTAAATAAG TTTTGACTTG CTGGCCCGTA GTAGATGTGC 587 AAAGTAATAG GCACGATCAC ACAGTTAC-- -TTTTTTCCC CATATAAATT GTGTTCTAGG 8751 |||||||||| |||||||||| |||||||| |||||| || |||||||||| ||||| |||| AAAGTAATAG GCACGATCAC ACAGTTACTT TTTTTTTTCC CATATAAATT GTGTTTTAGG 647 ATAGGTAGAA CGAACATGAC TGGAGCGATC CTTGTTCAGA TTGTAAAGAA AAGGACAGAG 8811 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATAGGTAGAA CGAACATGAC TGGAGCGATC CTTGTTCAGA TTGTAAAGAA AAGGACAGAC 707 CCAGTGCTGA CGGTTCTTAT ATGAGTGGGG TCTCGTCAAA GAATAACC 8859 |||||||||| |||||||||| |||||||||| ||| || ||| |||||||| CCAGTGCTGA CGGTTCTTAT ATGAGTGGGG TCTGGTTAAA GAATAACC 755 hqPGS_chr+_78108653- (7296 7385,8089 8257,8380 8475,8554 8859)