Query EST sequence XX (FILE: 60342279-]) 1 cgacagcgct ggtccgccgc atccgggggt ccatcaccac cactgcgaag ccctccctgc 61 acttgcgcag cgcctgcgcc agcacggaca gcagcagctc aacttctaca tgacagatga 121 atgaagaaga aaggaaggtc gaggagtgaa gcagtttgcg catgacccta aaattgcagc 181 gactctttcc cggaatgata ttgagctcct ggccttcctg ttgaccatac gggaacgagg 241 tgtataggta gaagtccaag agaacccagg atctgactgg gactcgctgt tgaagccaga 301 gaaacctcca tggccggctg gggatgtccg gtcgcgagct gcctgcatag ctgatgggat 361 tcgaagatgg cacgacagct gctcgcgcat aatcaggtca agccaatggg ggatttatga 421 tttaggagta aatgtacgta tgacaactac tgttcacaat agtttgattg gtggaggatg 481 tcacaatagg tatgtttaca attccactgc cggagacgaa attgaccatg gcatcgtcct 541 ttggcttgtc ctctgaagcg ttctcttgat gtcactgttg agtgttcagg tca Predicted gene structure (within BAC gi| 51315585 | segment 162647 to 165729): Exon 1 165729 165644 ( 86 n); EST 1 86 ( 86 n); score: 1.000 Intron 1 165643 163363 ( 2281 n); Pd: 0.941 (s: 1.00), Pa: 0.008 (s: 0.98) Exon 2 163362 163312 ( 51 n); EST 87 137 ( 51 n); score: 0.980 Intron 2 163311 163239 ( 73 n); Pd: 0.000 (s: 0.98), Pa: 0.308 (s: 1.00) Exon 3 163238 162980 ( 259 n); EST 138 396 ( 259 n); score: 1.000 Intron 3 162979 162844 ( 136 n); Pd: 0.998 (s: 1.00), Pa: 0.282 (s: 1.00) Exon 4 162843 162647 ( 197 n); EST 397 593 ( 197 n); score: 1.000 MATCH chr- 60342279- 0.998 593 1.000 C PGS_chr-_60342279- (165729 165644,163362 163312,163238 162980,162843 162647) Alignment: CGACAGCGCT GGTCCGCCGC ATCCGGGGGT CCATCACCAC CACTGCGAAG CCCTCCCTGC 165670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACAGCGCT GGTCCGCCGC ATCCGGGGGT CCATCACCAC CACTGCGAAG CCCTCCCTGC 60 ACTTGCGCAG CGCCTGCGCC AGCACGGTAA TTTTGTCAAA CACCTCATGT GCGGTACATT 165610 |||||||||| |||||||||| |||||| ACTTGCGCAG CGCCTGCGCC AGCACG.... .......... .......... .......... 86 TCAGTATCAG AAGCGCTGGT TTTGTTTGGG TGTGCTTGCT TTACCCATTC GGTGGTGAGG 165550 .......... .......... .......... .......... .......... .......... 86 CGTTGGTGGC GCCCGCGGCC GCGGCCACGC TCGATAGGGC GTCGGCCGGT GACGAGCTCG 165490 .......... .......... .......... .......... .......... .......... 86 ACGAGGAGGA CGCCGAAGGA GTAGACGTCG CTGCGGTCGG TGAGCTGGCT TGTGCGCAGG 165430 .......... .......... .......... .......... .......... .......... 86 TACTCAGGGT CCACGTATCC GGCCGTTCCC TTTACTAGCG TTGACACGTG GGTCGCTTCA 165370 .......... .......... .......... .......... .......... .......... 86 GGGTTTTCGG GGGCTAGGCG CGCGAAGCCA AAATCGGCAA CCTTTGCTCG CAGGTGCTCT 165310 .......... .......... .......... .......... .......... .......... 86 GTTAGGAGAA TGTTGGACGA CTTAATGTCT CGGTGGATGA TTGGATGATC TGCTTCCCAT 165250 .......... .......... .......... .......... .......... .......... 86 CGTAGGAAAA TATTTGTCAG ACATAAGGAT GCTGAAGGTT TGGTATCCGC AGTAGATGTC 165190 .......... .......... .......... .......... .......... .......... 86 AATACATAGA CATGTTGGTG GCTGTCATAC AAAATTCTGA TCATGGAACT GAGATGGTGA 165130 .......... .......... .......... .......... .......... .......... 86 TTTTCATGAT GGTTGTCTCA TCTAGGGAAC TGATGTGTGA TGACATTCAG GACCACGATC 165070 .......... .......... .......... .......... .......... .......... 86 AAATATGCAC TTGTGGGGTT ATGCCAAATA TGAATATCAT ATGCATCTAA GTTTGGGGGC 165010 .......... .......... .......... .......... .......... .......... 86 TGACACAATT TTTCATATAG AAATGGAGAG TGTGTACCTG TATATCCGTG CAAGTAGGCA 164950 .......... .......... .......... .......... .......... .......... 86 ATGGCATGAA CTATATCAAT AGCAATGTTG AGACGCTGTG CAAATTCCAA TGGTTCCCCT 164890 .......... .......... .......... .......... .......... .......... 86 TTTGATCCTG CATGCATAGT GGCAAAGTGT GTCGCCATGT TCCCTTTAAT CCAATGGAAA 164830 .......... .......... .......... .......... .......... .......... 86 AACATGAAGA TTTATAGCAT TACATTCTAC AACATAATTT GGCTCCAAAA ATCAAGATGG 164770 .......... .......... .......... .......... .......... .......... 86 TTGGAACTGG GAACATAAAT AAAACATGGT TCAGACATGC AAAAAAAAAA CCCCACAGGC 164710 .......... .......... .......... .......... .......... .......... 86 TCAAGCTGAA TAGCATACAC ATGTTTTTAC ATCTCTTTCA GTAGATTAAC ATTTAGTATA 164650 .......... .......... .......... .......... .......... .......... 86 CCACAAGTGA CCTGTCATAC TCTATTTATA AACAATACTT CAATGCATTT AACTTCATCC 164590 .......... .......... .......... .......... .......... .......... 86 AGTTCTACTA TCTTGGACTC TTGGTGAGCG GTGACTTACA AAATTATAAC TTTTACCATC 164530 .......... .......... .......... .......... .......... .......... 86 TTGACAATAT TGCTACACTA CCACAAAAAA TGAAGTAGTA TGTGTTTAAG CTTGTCCATT 164470 .......... .......... .......... .......... .......... .......... 86 GCACATGTTT GACGTACCAT CCAAGTGTTG ACGGAGTGTT CCATTATTGA CGTACTCAAC 164410 .......... .......... .......... .......... .......... .......... 86 CAGAATTAAG CGTTCATCCT CGTATTCCAC ATACCCAAGA AACTTTACCA AGTTCAAATG 164350 .......... .......... .......... .......... .......... .......... 86 CTCGACCTTT GACAGGCTCT GGATCTCACT TCTGAACTCT TCAGATAGAT GCCCACCATG 164290 .......... .......... .......... .......... .......... .......... 86 CATCTGCCAA ATCCAGATGT TGCATCAAAA CTTTTTCTTG ATTTGATTGC TGCAAGTAAC 164230 .......... .......... .......... .......... .......... .......... 86 TCGGTGGAGT AAATATGTAC AACATTTCTT CTGTTGAAGG AATATTCACC TACAAACCTT 164170 .......... .......... .......... .......... .......... .......... 86 AGTAGCCCTC TTTACAGCTA TGATGGATCC ATCCCTGAGT TTCGCCTTAT ACACCGTGCC 164110 .......... .......... .......... .......... .......... .......... 86 AAAATTACCT AAACCAATTT TGTTTTGTTC ACTAAAGTTT GAAGTAGCCT GGCAAATTTC 164050 .......... .......... .......... .......... .......... .......... 86 CTGAAACGAG AACTGCTCTT GCCAGGACTT TGTTTGGCTG CTGTCACCTC TCTGCCGGGA 163990 .......... .......... .......... .......... .......... .......... 86 TATATTATGT ATATTATTGC TTGTGCTACT TGTCGATGAA ATTCTGGAGA CTGCAGGAAA 163930 .......... .......... .......... .......... .......... .......... 86 CAATTGGAAA CCATCTTAAT TGGACTCAGA TTTTATTTAA TAGTTGAGCA GTTTGATTAA 163870 .......... .......... .......... .......... .......... .......... 86 GAACACATCC TCACAAAGTA TATTCAGCAT TGAGCAGCTA TGTATGTCTT GTTTTGGGCC 163810 .......... .......... .......... .......... .......... .......... 86 ACATATGGCC ATATGGGCGC TATTGAGTTT TGTAACTTGC GTAAAGCTTA ACGATCGACC 163750 .......... .......... .......... .......... .......... .......... 86 GCAAAAGCAT GTGAATAGAA ATGTCAGTTG AAGAGCAATG CTAACTTGAA CTAGTTTCAA 163690 .......... .......... .......... .......... .......... .......... 86 TTCTGATTAG CTTATTAGGT GAAAACTGGA AACAGGAAGT GGCAGTGAAA ACCCAGATTG 163630 .......... .......... .......... .......... .......... .......... 86 TAGATCGGGA TTCCGAGTAA GCTCAAACTT ACTGGTAGGT TGACTAACCA AGTAACCATC 163570 .......... .......... .......... .......... .......... .......... 86 AGGCTGTATC ATGATATTTG TAACCCATAA GTCGAAGGTC GATTAGGACG GACTCCTTAT 163510 .......... .......... .......... .......... .......... .......... 86 AGGCTCATTG CTGATTTATG CCACAATCTT GCATTACCAT GATTAAAACC GTTTCTTCTA 163450 .......... .......... .......... .......... .......... .......... 86 TAGAATCTTA AAAGTCCTGA TGCGATTCAT GTGACTAATT AAATATTCAC GTCTCCTTTC 163390 .......... .......... .......... .......... .......... .......... 86 TAAATTCTAA CTCAGAAGTC GTTTCAGGAC AGCAGCAGCT CAGCTTCTAC ATGACAGATG 163330 ||| |||||||||| || ||||||| |||||||||| .......... .......... .......GAC AGCAGCAGCT CAACTTCTAC ATGACAGATG 119 AATGAAGAAG AAAGGAAGGT GAGCTTACTG GGACTAGCAG ACACATCGTG GGCCTCGATC 163270 |||||||||| |||||||| AATGAAGAAG AAAGGAAG.. .......... .......... .......... .......... 137 GGAGGATTCT CATGTGCTTT CTTGACTTCA GGTCGAGGAG TGAAGCAGTT TGCGCATGAC 163210 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTCGAGGAG TGAAGCAGTT TGCGCATGAC 166 CCTAAAATTG CAGCGACTCT TTCCCGGAAT GATATTGAGC TCCTGGCCTT CCTGTTGACC 163150 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTAAAATTG CAGCGACTCT TTCCCGGAAT GATATTGAGC TCCTGGCCTT CCTGTTGACC 226 ATACGGGAAC GAGGTGTATA GGTAGAAGTC CAAGAGAACC CAGGATCTGA CTGGGACTCG 163090 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACGGGAAC GAGGTGTATA GGTAGAAGTC CAAGAGAACC CAGGATCTGA CTGGGACTCG 286 CTGTTGAAGC CAGAGAAACC TCCATGGCCG GCTGGGGATG TCCGGTCGCG AGCTGCCTGC 163030 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTGAAGC CAGAGAAACC TCCATGGCCG GCTGGGGATG TCCGGTCGCG AGCTGCCTGC 346 ATAGCTGATG GGATTCGAAG ATGGCACGAC AGCTGCTCGC GCATAATCAG GTACCATGTT 162970 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGCTGATG GGATTCGAAG ATGGCACGAC AGCTGCTCGC GCATAATCAG .......... 396 CTTCTGATTC TTAGCTTTTG TACACTCGGA GTTGATGGAG GATGGACTGA TTCAAGACTG 162910 .......... .......... .......... .......... .......... .......... 396 ATTCAAATTT TGACTGGGTG CATACATCTT TATTATCATA AAAAGGTGGT TGAAATGGGT 162850 .......... .......... .......... .......... .......... .......... 396 TTTCAGGTCA AGCCAATGGG GGATTTATGA TTTAGGAGTA AATGTACGTA TGACAACTAC 162790 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GTCA AGCCAATGGG GGATTTATGA TTTAGGAGTA AATGTACGTA TGACAACTAC 450 TGTTCACAAT AGTTTGATTG GTGGAGGATG TCACAATAGG TATGTTTACA ATTCCACTGC 162730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCACAAT AGTTTGATTG GTGGAGGATG TCACAATAGG TATGTTTACA ATTCCACTGC 510 CGGAGACGAA ATTGACCATG GCATCGTCCT TTGGCTTGTC CTCTGAAGCG TTCTCTTGAT 162670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAGACGAA ATTGACCATG GCATCGTCCT TTGGCTTGTC CTCTGAAGCG TTCTCTTGAT 570 GTCACTGTTG AGTGTTCAGG TCA 162647 |||||||||| |||||||||| ||| GTCACTGTTG AGTGTTCAGG TCA 593 hqPGS_chr-_60342279- (165729 165644,163362 163312,163238 162980,162843 162647)