Query EST sequence XX (FILE: 18963634+]) 1 CGTTGCTGTC GGAGGATCTA TGGATATCTG CTTTCCTGTT GGTACTAAGG AAGCCAACAG 61 GAAATTTTGG ACTGCTACCT GGATTAATGC TCGAGAAAAA AGGTGCATGA CATCAAAAAT 121 TGCTATTCTT ATTTGTTCTA TAGAACCTTA TGTGGAAACG TGCATTACAC AGTCCCAGCC 181 TCCTAGAGAC TATAGACATG GTATGCAGTC CCTAGGGACC GAGCCTCAGA GCTAGAGGAA 241 GTTATTCGTG TACATGGATA TGGAGGAAAC CCTGACCGCC TTGCATCGCT GGCAGTGCTT 301 GGGGAGAAGA CAACATTGAT GTCTCCAGAT GTTCTTGTAG CCCGTGGTGT GCCCTGCTGT 361 AGGTTAGTAC AGTATCCTGG Predicted gene structure (within BAC gi| 51315585 | segment 5087 to 5892): Exon 1 5087 5124 ( 38 n); EST 12 49 ( 38 n); score: 1.000 Intron 1 5125 5208 ( 84 n); Pd: 0.859 (s: 0.00), Pa: 0.648 (s: 0.94) Exon 2 5209 5352 ( 144 n); EST 50 195 ( 146 n); score: 0.938 Intron 2 5353 5520 ( 168 n); Pd: 0.439 (s: 1.00), Pa: 0.000 (s: 0.96) Exon 3 5521 5608 ( 88 n); EST 196 283 ( 88 n); score: 0.966 Intron 3 5609 5694 ( 86 n); Pd: 0.600 (s: 0.98), Pa: 0.943 (s: 1.00) Exon 4 5695 5772 ( 78 n); EST 284 362 ( 79 n); score: 0.955 Intron 4 5773 5874 ( 102 n); Pd: 0.000 (s: 0.93), Pa: 0.988 (s: 0.00) Exon 5 5875 5892 ( 18 n); EST 363 380 ( 18 n); score: 1.000 MATCH chr+ 18963634+ 0.950 366 0.963 C PGS_chr+_18963634+ (5087 5124,5209 5352,5521 5608,5695 5772,5875 5892) Alignment: GAGGATCTAT GGATATCTGC TTTCCTGTTG GTACTAAGGT TTGCTCCCAT CCCTGCCTTC 5146 |||||||||| |||||||||| |||||||||| |||||||| GAGGATCTAT GGATATCTGC TTTCCTGTTG GTACTAAG.. .......... .......... 49 TTTTATACCA TGTTTGCAAA GAATTACCAT TTTACCTGCT ATTTTTGTTT GCTATTCTTA 5206 .......... .......... .......... .......... .......... .......... 49 AGGAAGCAAA CAGGAAATTT TGGACTGGTA CCTGGATTAA TGCTTGAGAA AAAAGGTGCA 5266 ||||| || |||||||||| ||||||| || |||||||||| |||| ||||| |||||||||| ..GAAGCCAA CAGGAAATTT TGGACTGCTA CCTGGATTAA TGCTCGAGAA AAAAGGTGCA 107 TGACATC-AA TATTGCTATT C-TATTTGTT CTATAGAACC TTATGTGGAA ACGTGCATTA 5324 ||||||| || ||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TGACATCAAA AATTGCTATT CTTATTTGTT CTATAGAACC TTATGTGGAA ACGTGCATTA 167 CACAGTCCCA GCCTCCTAGA GACTATAGGT ATGCTGTTAT ATATGTTTGA AGAAAACAGA 5384 |||||||||| |||||||||| |||||||| CACAGTCCCA GCCTCCTAGA GACTATAG.. .......... .......... .......... 195 GAAAATGAAA ATTGTGTGCT TAGTAATTGT ATGCGCTGCT TTACTTTTGT CATGTATTGA 5444 .......... .......... .......... .......... .......... .......... 195 TTGAAAGTTT AAATATGCCA GCTTTTCATT CACTACACTA AACCAGTTAA CTTCCTTTCA 5504 .......... .......... .......... .......... .......... .......... 195 CACCGGTGCA CCCAAGACAT GGTATGCAGT GCCTAGGGGC CGAGCCTCAG AGCTAGAGGA 5564 |||| |||||||||| ||||||| | |||||||||| |||||||||| .......... ......ACAT GGTATGCAGT CCCTAGGGAC CGAGCCTCAG AGCTAGAGGA 239 AGTTATTCGT GTACATGGAT ATGGAGTAAA CCCTGACCGC CTTGGTATTT GTCCTTTCTC 5624 |||||||||| |||||||||| |||||| ||| |||||||||| |||| AGTTATTCGT GTACATGGAT ATGGAGGAAA CCCTGACCGC CTTG...... .......... 283 ATGCTCGCCA TCTGCATGTT TCGGTTGTGG TCTAGCAGGT TCCATAAATT TGTATTGTTA 5684 .......... .......... .......... .......... .......... .......... 283 ATCCACGCAG CATCGCTGGC AGTGCTTGGG GAGAAGACAA CATTGATGTC TCCAGATGTT 5744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... CATCGCTGGC AGTGCTTGGG GAGAAGACAA CATTGATGTC TCCAGATGTT 333 CTTGTAG-CC GTGGTGTGCC CTACTGTAGG TACAAGCTCT GAAATGGCTA GAGTTTCCAT 5803 ||||||| || |||||||||| || |||||| CTTGTAGCCC GTGGTGTGCC CTGCTGTAG. .......... .......... .......... 362 TGGGTCAAAT GTTCATGATA TTTTCAGACA TCAGATCTTA TGATTTTTTT TGCTGATATG 5863 .......... .......... .......... .......... .......... .......... 362 TACTGTTTCA GGTTAGTACA GTATCCTGG 5892 ||||||||| ||||||||| .......... .GTTAGTACA GTATCCTGG 380 hqPGS_chr+_18963634+ (5087 5124,5209 5352,5521 5608,5695 5772,5875 5892)